PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do014779.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NF-YC
Protein Properties Length: 319aa    MW: 35807 Da    PI: 4.3244
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do014779.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC54.32.9e-1744141398
       NF-YC   3 ksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrr.tlkksdiaaavtrtdifdflvdivp 97 
                   fw +     e+  df+nh lP+  i  i+ka++  +++s ++P +++k celfi elt+ +w+ a +  rr  +  sdi +a++ ++   fl d+  
  Do014779.1  44 DEFWRRSqedTENIVDFNNHILPMDHITEIIKANQG-SIMSYDTPPFVTKLCELFIQELTICAWMCASSHGRRfIILESDIIEAIN-SKPCVFLNDVLQ 140
                 5799866455888999*****************986.6779*************************998877626789******96.556678998877 PP

       NF-YC  98 r 98 
                 r
  Do014779.1 141 R 141
                 6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471137.38E-1242128IPR009072Histone-fold
Gene3DG3DSA:1.10.20.104.8E-1159127IPR009072Histone-fold
PfamPF008082.1E-565124IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MELKMARYRC STMSNGSNER SEDPQEFHVL PSTPLTISQE QEIDEFWRRS QEDTENIVDF  60
NNHILPMDHI TEIIKANQGS IMSYDTPPFV TKLCELFIQE LTICAWMCAS SHGRRFIILE  120
SDIIEAINSK PCVFLNDVLQ RHGINLDQAS TFNSASKVQQ ETNFLVATTT LLGDDSMLDV  180
KYKDGYSDLF MNDNNHHSCE SSNLAAPDIV TPPMSLEEVV NGGYQNIVVQ KCSETYDFAG  240
GNKCNTVPTE DIVTSKSTLH KDIMASESTL HKLVNEDLQF SEDNVVPIIN TQPDPLKLKN  300
DEDLNNISAN PSGSTKETK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002450581.14e-93hypothetical protein SORBIDRAFT_05g007280
TrEMBLC5Y8635e-93C5Y863_SORBI; Putative uncharacterized protein Sb05g007280
STRINGSb05g007280.11e-92(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17894510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.12e-14nuclear factor Y, subunit C1